Humboldt State University ® Department of Chemistry

Richard A. Paselk

Chem 431

Biochemistry

Fall 2008

Lecture Notes: 10 October

© R. Paselk 2008
 
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pH Effects on Enzymes (and Proteins)

Papain: inflection at pH 4.2 for cys-25 and at pH 8.2 for his-159.

plot of enzyme activity vs. pH

Note that the two legs represent two pH titration curves (rotate the left leg 90 deg. then flip; rotate the right leg 90 deg. counter clockwise and you can see them), with pK's equal to 4.2 and 8.2 respectively. This is a typical example for an enzyme with titratable groups in the active site. Can also have non-symmetrical curves with only one group. And of course can have curves due to denaturation by titration of charged surface and interior side chains.

Zymogens: define and give examples of trypsin/trypsinogen.

Allosterism and Allosteric Enzymes

Enzyme Catalysis

We will look at catalysis in two types of systems:

Mechanisms of Chemical Catalysis

Look at some examples of catalysis in model systems (organic chemistry) and how they might operate in enzymes.

Types of Catalysis:

So how does catalysis work? Recall that the slow step of a reaction is reaching the transition state. Thus if we can find a way to stabilize the transition state (lower Ea) then the reaction rate will be enhanced. Generally we will be looking at three ways to increase rates

  1. stabilize transition states
  2. increase the concentrations of intermediates
  3. use a different reaction pathway.


Pathway Diagrams

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Lecture Notes

Last modified 10 October 2008