Mark S. Wilson, Ph.D.
Publications:
Wilson, M.S, Siering P.L., White, C.L., Hauser, M.E. and Bartles, A.N. 2008.
Novel Archaea and Bacteria dominate stable microbial communities in North
America's largest hotspring. Microbial
Ecology 56: 292-305
Siering, P.L., Clarke J.M.*, and Wilson, M.S. 2006. Geochemical and
biological diversity of acidic, hot springs in Lassen Volcanic National Park.
Geomicrobiology Journal 23: 129-141
Wilson M.S., Herrick J.B., Jeon C.O, Hinman D.E., and Madsen E.L. 2003. Horizontal transfer of phn-Ac dioxygenase genes within
one of two phenotypically and genotypically distinctive naphthalene-degrading
guilds from adjacent soil environments. Appl. Environ. Microbiol. 69: 2172-2181
Colwell F.S., Delwiche M.E., Blackwelder D., Wilson M.S., Lehman R.M., and
Uchida, T. 1999. Microbial communities from core intervals, JAPEX/JNOC/GSC
Mallik 2L-38 gas hydrate research well. 1999
Geological Survey of Canada, Bulletin 544 p. 189-195
Wilson M. S., Bakermans C. and E. L. Madsen. 1999. In Situ, real-time catabolic
gene expression: extraction and characterization of naphthalene dioxygenase
mRNA transcripts from groundwater. Appl.
Environ. Microbiol. 65: 80-87
Wilson M.S. 1998. Transient molecular markers of in situ naphthalene
biodegradation at a coal tar-contaminated field site. Ph.D. dissertation, Department of Microbiology,
Cornell University, Ithaca NY, 221 pp.
Madsen E.L, Thomas C.T., Wilson M.S., Sandoli R. S., and Bilotta S.E. 1996.
In Situ dynamics of aromatic hydrocarbons and bacteria capable of AH metabolism
in a coal tar waste-contaminated field site.
Environ. Sci. and Technol., 30(7):2412-2416
Wilson, M. S. and E. L. Madsen. 1996. Field extraction of a transient
intermediary metabolite indicative of real time in Situ naphthalene
biodegradation. Environ. Sci. and Technol.,
30(6):2099-2103
Jewell W.J., Nelson Y.M, and Wilson M.S. 1992. Methanotrophic bacteria
for nutrient removal from wastewater:attached film system.Water Environment Research 64(6):756-765
Jacobson M.R., Brigle K.E., Bennett L.T., Setterquist R.A., Wilson M.S.,
Cash V.L., Beynon J., Newton W.E., and Dean D.R. 1989. Physical and genetic
map of the major nif gene cluster from Azotobacter vinelandii. J. Bacteriology 171(2):1017-1027
Wilson M.S. 1988. Mutagenesis of nifE and nifN from Azotobacter
vinelandii. Master’s Thesis, VPI&SU,
Blacksburg VA, 64 pp.
Texts:
Wilson, M.S. 2008. Mining Genomes: Introduction to Bioinformatics. This updated set of ten tutorials is being published
by W.H. Freeman & Co., NY, NY, in conjunction with Genetics, A Conceptual
Approach, #rd ed. Benjamin
Pierce. 2008 W. H. Freeman and Co.
Wilson, M.S. 2005. Mining Genomes: Introduction to Bioinformatics. This updated set of ten tutorials is being published
by W.H. Freeman & Co., NY, NY, in conjunction with Genetics, A Conceptual
Approach, 2nd ed. Benjamin
Pierce. 2005 W. H. Freeman and Co.
Wilson, M.S. 2002. Mining Genomes: Introduction to Bioinformatics. This set of ten tutorials was published by W.H.
Freeman & Co., NY, NY, in conjunction with Genetics, A Conceptual
Approach. Benjamin
Pierce. 2002 W. H. Freeman and Co. These interactive online bioinformatics
tutorials can also be accessed at http://bcs.whfreeman.com/pierce1e/
Abstracts:
Wardman*, C. D., Yip, A. N. , Wilson, M. S. and Siering, P. L.. 2009. Opening the Black Box of PCR: Exploring How 16S Genes are Affected by the T-RFLP Process. CSUPERB 21th Annual Biotechnology Symposium, Los Angeles CA Jan 17-19 (poster)
Ramirez*, M.U, Shcheglovitova*, M., and Wilson, M.S. 2009. Description and Use of a Diversity Index That Incorporates E.volutionary Distance. CSUPERB 21th Annual Biotechnology Symposium, Los Angeles CA Jan 17-19 (poster)
Wardman*, C.D., Wilson, M.S., White*, C.L., Siering, P.L. 2008. Comparison of TRFLP and Clone Library Analysis of Microbial Communities in North America's Largest Hot Spring. CSUPERB 20th Annual Biotechnology Symposium, Oakland CA Jan 11-13 (poster)
White*, C.L., Bartles, A.N.#, Siering, P.L. and Wilson M.S. 2007. T-RFLP Analysis of Microbial Communities in a Hot Acidic Lake Suggests Temperature Controls Community Structure. CSUPERB 19th Annual Biotechnology Symposium, Los Angeles CA Jan 12-14 (poster)
Donnie L. Carter*, Amber L. Orloff*, Erika L. Kraft* and Mark S. Wilson 2006. Isolation and Genetic Characterization of Naphthalene-Degrading Bacteria from Humboldt Bay, CA. American Society for Microbiology 106th General Meeting, Orlando FL May 21-25, 2006 (poster)
L. Hamm*, J. Kee*, A. M. Anacker*, M. S. Wilson, P. L. Siering 2006. Isolation
of Heterotrophic Prokaryotes from a Hot Acidic Lake (Boiling Springs Lake) in
Northern CA . American Society for
Microbiology 106th General Meeting, Orlando FL May 21-25, 2006 (poster)
Carter D.L.*, Orloff A.L.*, Kraft E.L.*, Wisz J.L.*, and Wilson M.S. 2006. Genetic
characterization of naphthalene-degrading bacterial isolates from Humboldt Bay,
CA. CSUPERB 18th Annual Biotechnology
Symposium, San Jose CA Jan 13-16 (poster)
Hauser, M.E.*, Siering, P.L. and Wilson, M.S. 2005. Molecular Analysis of fungal diversity in a hot, acidic lake at Lassen Volcanic National Park. CSUPERB 17th Annual Biotechnology Symposium, Los Angeles CA USA Jan. 14-16 (poster)
Wilson, M.S., Carter, A.T.*, and Siering, P.L. 2004. Molecular analysis of microbial communities in a 55°C pH 1.7 lake in Lassen Volcanic National Park. American Society for Microbiology, New Orleans, LA USA, May 23-27, 2004. Audience: microbiologists, geologists, geneticists (poster)
Siering, P.L, and Wilson, M.S. 2004. Geochemical and biological diversity in near-boiling acidic hotsprings. American Society for Microbiology, New Orleans, LA USA, May 23-27, 2004. Audience: microbiologists, geologists, geneticists (poster)
Siering, P.L, and Wilson, M.S. 2001. Investigations of environmental and
microbial diversity in high temperature, low pH geothermal features at Lassen
Volcanic National Park. 101st General
Meeting of the American Society for Microbiology, Orlando, Fla, USA, May 20-24,
2001 #N-197
Cone, A.C*.and M.S. Wilson. 2001. Microbial Diversity in a pH 1.7, 55°C
Lake in Lassen Volcanic National Park. 13th
Annual CSUPERB Biotechnology Symposium, Cal Poly Pomona, CA, Jan. 9-13, 2001
Wilson, M.S, Lehman, R. M.and Colwell, F.S. 1999. Comparison of culture
and non-culture based approaches for quantifying methanotrophic bacteria in
deep groundwater from the Snake River Plain Aquifer. International Symposium on Subsurface Microbiology, Vail, CO, Aug.
22-27, 1999
Colwell, F.S., Delwiche, M., Blackwelder, D., Lehman, R.M., Fujita, Y.,
Wilson, M.S., Uchida, T. 1999. Distribution of microbial communities in
sediments that contain methane hydrates.
International Symposium on Subsurface Microbiology, Vail, CO Aug. 22-27, 1999
Colwell, F.S., Delwiche, M., Blackwelder, D., Lehman, R.M., Fujita, Y.,
Wilson, M.S., Uchida, T. 1999. Investigations on the distribution and
constraints of microbial communities in the presence of gas hydrates. American Geophysical Union Spring 1999 Meeting,
Boston Massachusetts, May 31-June 4
Colwell, F.S., Delwiche, M.,Blackwelder, D., Wilson, M.S., and Uchida, T.
1998. Microbial communities in deep marine and circumpolar sediments: a link
to the methane in gas hydrates. American
Geophysical Union Fall 1998 Mtg., San Francisco CA Dec. 6-10, 1998. U32A-05.
Wilson, M.S., and Madsen, E.L. 1997. Detection of in situ transcription
of naphthalene dioxygenase genes in coal tar waste-contaminated groundwater. 97th General Meeting of the American Society for
Microbiology, Miami, Fla, USA, May 4-8, 1997. 1551.
Madsen, E.L., Mann, C.L*., Bilotta, S.E., Wilson, M.S. and Yager, R.M. 1997.
In situ attenuation of chlorinated ethenes by naturally-occurring
microorganisms in a fractured dolomite aquifer near Niagara Falls, NY. 97th General Meeting of the American Society for
Microbiology, Miami, Fla, USA, May 4-8, 1997. 473
Wilson, M.S., and Madsen, E.L. 1995. Mechanisms of bioremediation: using
physiological and molecular microbiology to understand the fate of
environmental contaminants in field sites.
Joint Annual Meeting of the Canadian Society of Microbiologists/ Northeastern
Microbiologists, Physiologists, Ecologists and Taxonomists; Kingston, Ontario,
Canada, June 11-15, 1995 (invited oral presentation by M. S. Wilson)
Madsen, E. L., Herrick, J. B., Wilson, M. S., Stuart, K. G., Sandoli, R. S.,
and Ghiorse, W. C. 1995. Molecular and biochemical microbial ecology of a
coal-tar waste site undergoing intrinsic bioremediation. Third Annual Bioreclamation Symposium, San Diego, CA,
USA, April 24-27, 1995 (oral presentation by Mark S. Wilson)
Wilson, M.S., and Madsen, E.L. 1995. Recovery of
1,2-Dihydro-1,2-dihydroxynaphthalene from a contaminated field site indicates
in situ naphthalene biodegradation. 95th
General Meeting of the American Society for Microbiology, Washington, D.C.,
USA, May 21-25, 1995. 421. (poster)
Wilson, M.S., Herrick, J.B., and Madsen, E.L. 1995. Analysis of
intermediary metabolites from diverse bacteria indicate a highly conserved
pathway for naphthalene catabolism. 95th
General Meeting of the American Society for Microbiology, Washington, D.C.,
USA, May 21-25, 1995. 472. (poster)
Madsen, E. L., C. T. Thomas, M. S. Wilson, and R. L. Sandoli. 1994.
Mobility of polycyclic aromatic hydrocarbons (PAHs) and bacteria capable of PAH
metabolism in a coal-tar contaminated field site. 94th General Meeting of the American Society for Microbiology, Las
Vegas, Nevada, USA, May 23-27, 1994. 411. (poster)
Wilson, M.S., Leong, J.C., and Lapatra, S.E. 1993. Characterization and quantitation
of immunogens in a recombinant subunit vaccine against infectious hematopoietic
necrosis virus. Conference on
Characterization and Quantitation of Immunogens in Veterinary Biologics, Ames,
Iowa, USA, May 5-6, 1992. Veterinary Microbiology 37(3-4);
418-419. (poster)
Wilson, M., Setterquist, R., Weiss, M., Newton, W., and Dean, D. 1988. Analysis
of nifE and nifN genes from Azotobacter vinelandii. In Nitrogen Fixation:Hundred Years After, Proceedings of the Seventh International Conference
On Nitrogen Fixation, W.E. Newton, H.J. Bothe, and F.J. De Bruijn, eds, Gustav
Fischer, Stuttgart, p.325
Beynon, J., Cannon, M., Cannon, F., Howard, J., Jacobson, M., Wilson, M.,
and Dean, D. 1988. Identification of new nif-specific genes from Azotobacter
vinelandii and Klebsiella pneumoniae. In Nitrogen
Fixation:Hundred Years After, Proceedings
of the Seventh International Conference On Nitrogen Fixation, W.E. Newton, H.J.
Bothe, and F.J. De Bruijn, eds, Gustav Fischer, Stuttgart, p.318 (poster)
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